Phylo-SMC is a Bayesian phylogenetic inference tool based on Sequential Monte Carlo (SMC), an alternative to the standard Markov Chain Monte Carlo approach (MCMC). Alpha-release-0 contains the raw data and the code for replicating the main experiments in the paper below. The tool is currently in alpha version and is not yet ready for day-to-day usage, but we are working on releasing a more user-friendly version with source code.
Please use the following citation if you use the software: Bouchard, A., Sankararaman, S., Jordan, M.I.. Phylogenetic Inference via Sequential Monte Carlo. Systematic Biology, In Press (2011).