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Publications by Jennifer Bryan

2012

Louie RJ, Guo J, Rodgers JW, White R, Shah NA, Pagant S, et al. A yeast phenomic model for the gene interaction network modulating CFTR-Delta F508 protein biogenesis. GENOME MEDICINE. 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND: BIOMED CENTRAL LTD; 2012;4:103.
McLellan JL, O'Neil NJ, Barrett I, Ferree E, van Pel DM, Ushey K, et al. Synthetic Lethality of Cohesins with PARPs and Replication Fork Mediators. PLOS GENETICS. 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA: PUBLIC LIBRARY SCIENCE; 2012;8:e1002574.

2011

Kennedy MA, Kabbani N, Lambert JP, Swayne LA, Ahmed F, Figeys D, et al. Srf1 is a novel regulator of phospholipase D activity and is essential to buffer the toxic effects of C16:0 platelet activating factor. PLoS Genet. 2011;7:e1001299.

2010

Kokel D, Bryan J, Laggner C, White R, Cheung CYan J, Mateus R, et al. Rapid behavior-based identification of neuroactive small molecules in the zebrafish. NATURE CHEMICAL BIOLOGY. 75 VARICK ST, 9TH FLR, NEW YORK, NY 10013-1917 USA: NATURE PUBLISHING GROUP; 2010;6:231-237.

2009

McLellan J, O'Neil N, Tarailo S, Stoepel J, Bryan J, Rose A, et al. Synthetic Lethal Genetic Interactions That Decrease Somatic Cell Proliferation in Caenorhabditis elegans Identify the Alternative RFCCTF18 as a Candidate Cancer Drug Target. MOLECULAR BIOLOGY OF THE CELL. 8120 WOODMONT AVE, STE 750, BETHESDA, MD 20814-2755 USA: AMER SOC CELL BIOLOGY; 2009;20:5306-5313.

2008

Brumm J, Conibear E, Wasserman WW, Bryan J. Discovery and Expansion of Gene Modules by Seeking Isolated Groups in a Random Graph Process. PLOS ONE. 185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA: PUBLIC LIBRARY SCIENCE; 2008;3:e3358.
Schluter C, Lam KKY, Brumm J, Wu BW, Saunders M, Stevens TH, et al. Global analysis of yeast endosomal transport identifies the Vps55/68 sorting complex. MOLECULAR BIOLOGY OF THE CELL. 8120 WOODMONT AVE, STE 750, BETHESDA, MD 20814-2755 USA: AMER SOC CELL BIOLOGY; 2008;19:1282-1294.
Marks VD, Sui SJHo, Erasmus D, van der Merwe GK, Brumm J, Wasserman WW, et al. Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response. FEMS YEAST RESEARCH. 9600 GARSINGTON RD, OXFORD OX4 2DQ, OXON, ENGLAND: BLACKWELL PUBLISHING; 2008;8:35-52.

2007

Mayor T, Graumann J, Bryan J, MacCoss MJ, Deshaies RJ. Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway. MOLECULAR & CELLULAR PROTEOMICS. 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3996 USA: AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC; 2007;6:1885-1895.
Konorov SO, Glover CH, Piret JM, Bryan J, H. Schulze G, Blades MW, et al. In situ analysis of living embryonic stem cells by coherent anti-stokes Raman Microscopy. ANALYTICAL CHEMISTRY. 1155 16TH ST, NW, WASHINGTON, DC 20036 USA: AMER CHEMICAL SOC; 2007;79:7221-7225.
Kavoosi M, Lam D, Bryan J, Kilburn DG, Haynes CA. Mechanically stable porous cellulose media for affinity purification of family 9 cellulose-binding module-tagged fusion proteins. J Chromatogr A. 2007;1175:187–196.

2006

Glover CH, Marin M, Eaves CJ, Helgason CD, Piret JM, Bryan J. Meta-analysis of differentiating mouse embryonic stem cell gene expression kinetics reveals early change of a small gene set. PLOS COMPUTATIONAL BIOLOGY. 185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA: PUBLIC LIBRARY SCIENCE; 2006;2:e158.
Mookherjee N, Brown KL, Bowdish DM, Doria S, Falsafi R, Hokamp K, et al. Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37. J. Immunol. 2006;176:2455–2464.

2005

Hsiao WW, Ung K, Aeschliman D, Bryan J, Finlay BB, Brinkman FS. Evidence of a large novel gene pool associated with prokaryotic genomic islands. PLoS Genet. 2005;1:e62.

2004

Baetz K, McHardy L, Gable K, Tarling T, Reberioux D, Bryan J, et al. Yeast genome-wide drug-induced haploinsufficiency screen to determine drug mode of action. Proc. Natl. Acad. Sci. U.S.A. 2004;101:4525–4530.
Hokamp K, Roche FM, Acab M, Rousseau ME, Kuo B, Goode D, et al. ArrayPipe: a flexible processing pipeline for microarray data. Nucleic Acids Res. 2004;32:W457–459.
Bryan J, Yu Z, Van Der Laan MJ. Analysis of longitudinal marginal structural models. Biostatistics. 2004;5:361–380.

2003

Van der Laan M, Pollard K, Bryan J. A new partitioning around medoids algorithm. Journal of Statistical Computation and Simulation [Internet]. 2003;73:575-584. http://dx.doi.org/10.1080/0094965031000136012

2002

2001

Van Der Laan MJ, Bryan J. Gene expression analysis with the parametric bootstrap. Biostatistics. 2001;2:445–461.

1998

Bryan J, Sun R. Temporal trends in survival after AIDS in California, 1985 - 1994. California HIV/AIDS Update. 1998;11:88 - 29.