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Disclaimer: I park links here that come up repeatedly in my own work and in my teaching. I freshen/organize very sporadically.

My links to certain eBooks and repositories are tuned to UBC users.

eBook repositories

Books (updated January 2014; older list below)

plyr package for data aggregation

Smart editor/IDE set-ups for R programming (M = Mac OS or other *nix, W = Windows, A = both)

Potentially helpful links related to the editor/IDE issue (no guarantees these are good, current, etc.)

R style, coding conventions, and philosophy

eBooks (your mileage may vary depending on your personal or institutional subscription coverage)