GeneMANIA related algorithms for predicting gene function:


  1. • GeneMANIA 1.0 from Genome Biology 2008 (matlab code)

  2. • Regularized GeneMANIA from Bioinformatics 2010 (matlab code)

  3. • The 3Prop algorithm (matlab code)

 


Accounting for hidden confounding factors:


  1. • MATLAB code for HCP (matlab code)

eQTL data and some code:


  1. • Depression Genes and Networks study (website) (from Battle et al. GR 2014)

  2. • ImmGen eQTLs and other data (immgen website)

GTEx tissue-specific co-expression networks:


  1. • GNAT web tool (website)