Alexandre Bouchard-Côté

How to typeset my name


PhD thesis


Probabilistic Models of Evolution and Language Change
Alexandre Bouchard-Côté (2010)
UC Berkeley

Preprints, Workshop Papers, Discussions, Reports, etc.


2018

Probabilistic inference of clonal gene expression through integration of RNA & DNA-seq at single-cell resolution
Kieran Campbell, Alexandre Bouchard-Côté, Sohrab Shah (2018)
HitSeq

2017

Exponential ergodicity of the Bouncy Particle Sampler
George Deligiannidis, Alexandre Bouchard-Côté, Arnaud Doucet (2017)
arXiv 1705.04579
Piecewise Deterministic Markov Chain Monte Carlo
Paul Vanetti, Alexandre Bouchard-Côté, George Deligiannidis, Arnaud Doucet (2017)
arXiv 1707.05296
Sequential decision model for inference and prediction on non-uniform hypergraphs with application to knot matching from computational forestry
Seong-Hwan Jun, Samuel W. K. Wong, James V. Zidek, Alexandre Bouchard-Côté (2017)
arXiv 1708.07592

2015

Inference of clonal genotypes from single cell sequencing data
Andrew Roth, Andrew McPherson, Alexandre Bouchard-Côté, Sohrab Shah (2015)
HitSeq
The Importance of Mutation Loss in Modelling Evolution and Metastasis in Genomically Unstable Cancers
Andrew McPherson, Andrew Roth, Jessica McAlpine, Alexandre Bouchard-Côté, Sohrab P. Shah (2015)
HitSeq
Particle Gibbs Split-Merge Sampling for Bayesian Inference in Mixture Models
Alexandre Bouchard-Côté,  Arnaud Doucet,  Andrew Roth (2015)
arXiv 1508.02663

2014

An Entropy Search Portfolio for Bayesian Optimization
Bobak Shahriari,  Ziyu Wang,  Matthew W. Hoffman,  Alexandre Bouchard-Côté,  Nando de Freitas (2014)
arXiv 1406.4625
Divide-and-Conquer with Sequential Monte Carlo
Fredrik Lindsten,  Adam M. Johansen,  Christian A. Naesseth,  Bonnie Kirkpatrick,  Thomas B. Schon,  John Aston, Alexandre Bouchard-Côté (2014)
arXiv 1406.4993

2013

A Note on Probabilistic Models over Strings: Inference and  Representation with Indexed Matrices
Alexandre Bouchard-Côté (2013)
arXiv 1301.5054
Efficient Continuous-Time Markov Chain Estimation
Monir Hajiaghayi, Bonnie Kirkpatrick, Liangliang Wang, Alexandre Bouchard-Côté (2013)
arXiv 1309.325
A Stochastic Map View of Sequential Monte Carlo with Applications to Memory and Network Efficiency
Seong-Hwan Jun, Alexandre Bouchard-Côté (2013)
Randomized Algorithm Workshop at Advances in Neural Information Processing Systems 26 (NIPS)

2012

Harnessing Non-Local Evolutionary Events for Tree Inference
Liangliang Wang, Alexandre Bouchard-Côté (2012)
Society for Molecular Biology and Evolution
The Poisson Indel Process
Alexandre Bouchard-Côté, Michael I. Jordan (2012)
arXiv 1207.6327

2011

Discussion: Bayesian priors for loss matching
Alexandre Bouchard-Côté, James V. Zidek (2011)
International Statistical Review 80:83–86

2010

Joint Probabilistic Modeling of Languages and Genes
Sriram Sankararaman, Alexandre Bouchard-Côté, Michael I. Jordan (2010)
Society for Molecular Biology and Evolution
Bayesian Phylogenetic Inference using Sequential Monte Carlo Algorithms
Alexandre Bouchard-Côté, Sriram Sankararaman, Michael I. Jordan (2010)
Society for Molecular Biology and Evolution
Probabilistic Models of Evolution and Language Change
Alexandre Bouchard-Côté (2010)
UC Berkeley

2009

A Hierarchical Dirichlet Process Prior for a Conditional Model of Phrase Alignment
John DeNero, Alexandre Bouchard-Côté (2009)
Workshop on statistical NLP at Advances in Neural Information Processing Systems 21 (NIPS)

Old Scribbles