Alexandre Bouchard-Côté

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PhD thesis


Probabilistic Models of Evolution and Language Change
Alexandre Bouchard-Côté (2010)
UC Berkeley

Preprints, Workshop Papers, Discussions, Reports, etc.


2017

Exponential ergodicity of the Bouncy Particle Sampler
George Deligiannidis, Alexandre Bouchard-Côté, Arnaud Doucet (2017)
arXiv 1705.04579
Piecewise Deterministic Markov Chain Monte Carlo
Paul Vanetti, Alexandre Bouchard-Côté, George Deligiannidis, Arnaud Doucet (2017)
arXiv 1707.05296
Sequential decision model for inference and prediction on non-uniform hypergraphs with application to knot matching from computational forestry
Seong-Hwan Jun, Samuel W. K. Wong, James V. Zidek, Alexandre Bouchard-Côté (2017)
arXiv 1708.07592

2016

Piecewise Deterministic Markov Processes for Scalable Monte Carlo on Restricted Domains
Joris Bierkens, Alexandre Bouchard-Côté, Arnaud Doucet, Andrew B. Duncan, Paul Fearnhead, Gareth Roberts, Sebastian J. Vollmer (2016)
arXiv 1701.04244

2015

Inference of clonal genotypes from single cell sequencing data
Andrew Roth, Andrew McPherson, Alexandre Bouchard-Côté, Sohrab Shah (2015)
HitSeq
The Importance of Mutation Loss in Modelling Evolution and Metastasis in Genomically Unstable Cancers
Andrew McPherson, Andrew Roth, Jessica McAlpine, Alexandre Bouchard-Côté, Sohrab P. Shah (2015)
HitSeq
Particle Gibbs Split-Merge Sampling for Bayesian Inference in Mixture Models
Alexandre Bouchard-Côté,  Arnaud Doucet,  Andrew Roth (2015)
arXiv 1508.02663

2014

An Entropy Search Portfolio for Bayesian Optimization
Bobak Shahriari,  Ziyu Wang,  Matthew W. Hoffman,  Alexandre Bouchard-Côté,  Nando de Freitas (2014)
arXiv 1406.4625
Divide-and-Conquer with Sequential Monte Carlo
Fredrik Lindsten,  Adam M. Johansen,  Christian A. Naesseth,  Bonnie Kirkpatrick,  Thomas B. Schon,  John Aston, Alexandre Bouchard-Côté (2014)
arXiv 1406.4993

2013

A Note on Probabilistic Models over Strings: Inference and  Representation with Indexed Matrices
Alexandre Bouchard-Côté (2013)
arXiv 1301.5054
Efficient Continuous-Time Markov Chain Estimation
Monir Hajiaghayi, Bonnie Kirkpatrick, Liangliang Wang, Alexandre Bouchard-Côté (2013)
arXiv 1309.325
A Stochastic Map View of Sequential Monte Carlo with Applications to Memory and Network Efficiency
Seong-Hwan Jun, Alexandre Bouchard-Côté (2013)
Randomized Algorithm Workshop at Advances in Neural Information Processing Systems 26 (NIPS)

2012

Harnessing Non-Local Evolutionary Events for Tree Inference
Liangliang Wang, Alexandre Bouchard-Côté (2012)
Society for Molecular Biology and Evolution
The Poisson Indel Process
Alexandre Bouchard-Côté, Michael I. Jordan (2012)
arXiv 1207.6327

2011

Discussion: Bayesian priors for loss matching
Alexandre Bouchard-Côté, James V. Zidek (2011)
International Statistical Review 80:83–86

2010

Joint Probabilistic Modeling of Languages and Genes
Sriram Sankararaman, Alexandre Bouchard-Côté, Michael I. Jordan (2010)
Society for Molecular Biology and Evolution
Bayesian Phylogenetic Inference using Sequential Monte Carlo Algorithms
Alexandre Bouchard-Côté, Sriram Sankararaman, Michael I. Jordan (2010)
Society for Molecular Biology and Evolution
Probabilistic Models of Evolution and Language Change
Alexandre Bouchard-Côté (2010)
UC Berkeley

2009

A Hierarchical Dirichlet Process Prior for a Conditional Model of Phrase Alignment
John DeNero, Alexandre Bouchard-Côté (2009)
Workshop on statistical NLP at Advances in Neural Information Processing Systems 21 (NIPS)

Old Scribbles